Add the paper I just downloaded — it's about peptide binders.
lit add ~/Downloads/2310.19325v2.pdf
lit modify 2024_Chen --add-tag topics=peptide-design --set priority=A
Filed under peptide-design, priority A, in papers/2024_Chen_Diffusion-Peptide-Binders/. It cites two papers already in your vault — link them?
Which paper did I read on diffusion models for peptide design?
lit list --topic peptide-design --status read --sort recent
That's Chen 2024 — you read it three weeks ago. Your notes.md flags the sampler as the weak point. Open it?
Clone this paper's code and check the training script runs.
lit code add 2024_Chen --repo github.com/chen-lab/diff-peptide
cd codes/2024_Chen && python train.py --dry-run
Cloned into codes/2024_Chen/. train.py needs torch 2.1 and a config they didn't ship — I drafted one and noted it in discussion.md.
What else in my library connects to this one?
lit list --method diffusion --topic peptide-design
lit relations 2024_Chen --add related=Watson2023,Ingraham2023
Three neighbours already in your vault: Watson 2023 · Ingraham 2023 · Badrinarayanan 2024. I linked the closest two as related.
